Vmd movies11/3/2022 0 Comments
#Vmd movies movie#With an easy-to-follow syntax and flexible composition rules, the tool greatly simplifies movie design, allowing the user to focus on conceptual rather than technical issues. These shortcomings prompted us to create Molywood, a Python tool capable of managing complex moviemaking workflows across a range of utilities, including the open-source utilities FFmpeg and Imagemagick, Python鈥檚 Matplotlib and VMD with its extended Tcl scripting capabilities ( Humphrey et al., 1996). While molecular movies of excellent quality do exist in the literature, they are usually a result of a lengthy work on integrating workflows, automatizing and post-processing. Simultaneously, platforms such as Molecular Maya are commercial and thus not accessible to many researchers. In fact, a very limited choice of such tools exists today: VMD鈥檚 Movie Maker remains limited to simplest cases, BioBlender and ePMV require programming and/or Blender skills ( Andrei et al., 2012 Johnson et al., 2011), while PyMOL鈥檚 eMovie effectively vanished from the Web ( Hodis et al., 2007 Hsin et al., 2008). On the other hand, researchers often find existing tools inadequately suited to these challenges. Not only are publishers starting to actively encourage the use of multimedia in the new enhanced, web-only article formats, but also science communication has become increasingly visual due to the proliferation of science-oriented blogs, vlogs and social media channels ( Welbourne and Grant, 2016). This situation could be rectified through widespread adoption of molecular movies as a complementary visual aid in the dissemination of scientific findings ( McGill, 2008). However, the scientific communication of these findings primarily relies on still images and figures, often obscuring or distorting the structural insights. The two revolutions in high-resolution structural biology-first in X-ray crystallography, second in cryogenic electron microscopy (cryo-EM) imaging ( Stuart et al., 2016)-resulted in tens of thousands of unique protein structures being deposited in public databases, ultimately providing us with an atomistic-level insight into the peculiar world of molecular shapes and conformational changes. Useful discussions are on Wikipedia and here.Since the groundbreaking resolution of the 3-dimensional structure of myoglobin in 1960 ( Kendrew et al., 1960), our understanding of processes of life has increasingly relied on the visualization of molecules. #Vmd movies download#
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. Archives
November 2022
Categories
All
RSS Feed |